作者oopa (11)
看板Biotech
標題[問題] 請問小鼠尾巴genomic DNA萃取,DNA沉澱步驟相關問題
時間Tue Oct 9 19:41:58 2007
以往用傳統方法(phenol-chloroform)萃取小鼠尾的genomic DNA
所得之產物將用於genotyping(PCR)
以往於"以absolute EtOH沉澱DNA"這個步驟中
只要加入兩倍sample體積的EtOH
invert幾次就可以看到漂亮的棉絮狀DNA沉澱出來
但是隔了約兩個月再做
卻發現一加ETOH就變成全部混濁
完全不覆以往的棉絮狀沉澱
非常困擾
希望有好心人提供看法跟建議
什麼都可以 感謝!
Lysis buffer:
NaCl 100 mM
Tris (pH8) 50 mM
EDTA (pH8) 50 mM
SDS 1%
Proteinase K 200 ug/ml (freshly prepared and added)
步驟
轫 1. Freshly prepare lysis buffer, add Proteinase K (Stock 2 mg/ml, 1ml/tube; stored at -30℃) to final concentration=200 ug/ml (10x dilution).
轫 2. Add 500 ul (can be modified to 700 ul) lysis buffer to mouse tail sample.
顷 55℃, gently shaking O/N (12~16hr)
轫 3. Add 500 ul (or 1V lysis buffer) phenol, invert 5-10 times.
顷 12000 rpm, 5 min, RT
轫 4. Collect upper water phase solution into new microtube, Add 500 ul (1V) phenol chloroform IAA (24:25:1), invert 5-10 times.
顷 12000 rpm, 5 min, RT
轫 5. Collect upper water phase solution into new microtube, Add 500 ul (1V) chloroform, invert 5-10 times.
顷 12000 rpm, 5 min, RT
轫 6. Collect upper water phase solution into new microtube, add 900 ul 100% ethanol invert upside down until transparent or white precipitate appears.
轫 7. Pellet down the precipitate, discard supernatant. Add 70% ethanol.
顷 12000 rpm, 3 min, RT
轫 8. Discard supernatant (suction out the residual liquid drops, if necessary) air dry to vaporize the ethanol.
轫 9. Add 42℃ ddH2O according to desired concentration, stand for complete dissolving DNA. (Gently tapping the tube helps disslving)
轫 10. Store at 4℃ temporally. After experiment, transfer DNA to 4℃ for long term storage.
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1F:推 daniel2806:應該是isoporpanol吧 10/10 00:00
2F:推 huangsw:我們家也是用絕對酒精 10/10 00:06
3F:推 chvkimo:我聽過 isopropanol 效果比酒精好 (酒精也可以用) 10/10 13:59
4F:→ chvkimo:有人可以分享一下 或做精確的解說嗎? 10/10 14:00
5F:推 oopa:問題是以前用絕對酒精效果很好.現在卻不行,難道酒精吸水了?ꐠ 10/10 22:10
6F:推 pianostar:isopropanol 沉澱效果好 但是鹽類殘留多 洗鹽要多洗幾次 11/04 04:41
7F:→ pianostar:酒精沉澱 鹽類殘留少 沉澱效果沒異丙醇好~ 11/04 04:43
8F:→ pianostar:純酒精的確會吸水 所以 存放的無水酒精要用parafilm封口 11/04 04:44
9F:→ pianostar:根據本人的經驗 沉澱genomic DNA 如果霧霧一片 11/04 04:45
10F:→ pianostar:DNA應該是斷光光的狀態喔!!@@ 11/04 04:45