作者lelojack (莉罗夹克)
看板Biology
标题Re: [问题] Sub-cellular localization网站
时间Wed Nov 16 23:05:23 2016
※ 引述《over999 (唉呦)》之铭言:
: 请问我想找关於基因表现出的蛋白
: 在细胞中的位置 除了GeneCards和 Human protein Atlas之外 有更好的网站有标出Sub-c
: ellular localization吗
: 谢谢!
: BTW 我还想问
: Metacore/IPA等大资料库中的Subcellular 是准的吗 有些基因在网站跟软体中写的位置
: 不太一样欸
Gene ontology db 用过吗?
Ontologies
Cellular Component
These terms describe a component of a cell that is part of a larger object,
such as an anatomical structure (e.g. rough endoplasmic reticulum or nucleus)
or a gene product group (e.g. ribosome, proteasome or a protein dimer)
定义精细到我很难用
例如底下这个 分类超级细
Name
transmembrane transporter complex
Definition
A transmembrane protein complex which enables the transfer of a
substance from one side of a membrane to the other.
http://imgur.com/a/rirAg
从上图看得出来 除了transmembrane transporter complex还有其他比较粗的分类
你可以当作大分类及小分类的概念
做高通量分析使用小分类会搞死自己,而用大分类又骚不到痒处
至於证据 资料库也有标示
证据程度由大到小
direct assay evidence used in manual assertion
sequence similarity evidence used in manual assertion
biological aspect of ancestor evidence used in manual assertion
curator inference used in manual assertion
physical interaction evidence used in manual assertion
genetic interaction evidence used in manual assertion
IPA等资料库基本上都会参考这个资料库的内容
因为这个资料库一来免费 二来公开检视资料
应该对你有帮助
Jack
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1F:推 over999: 感恩 感激 我会好好研究的 11/17 00:45